Pattern Recognition in Bioinformatics: 5th IAPR International Conference, PRIB 2010, Nijmegen, The Netherlands, September 22-24, 2010. Proceedings

Front Matter....Pages -
Front Matter....Pages 1-1
Sequence-Based Prediction of Protein Secretion Success in Aspergillus niger ....Pages 3-14
Machine Learning Study of DNA Binding by Transcription Factors from the LacI Family....Pages 15-26
Joint Loop End Modeling Improves Covariance Model Based Non-coding RNA Gene Search....Pages 27-37
Structured Output Prediction of Anti-cancer Drug Activity....Pages 38-49
SLiMSearch: A Webserver for Finding Novel Occurrences of Short Linear Motifs in Proteins, Incorporating Sequence Context....Pages 50-61
Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence....Pages 62-73
Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations....Pages 74-85
Preservation of Statistically Significant Patterns in Multiresolution 0-1 Data....Pages 86-97
Novel Machine Learning Methods for MHC Class I Binding Prediction....Pages 98-109
Front Matter....Pages 111-111
SIMCOMP: A Hybrid Soft Clustering of Metagenome Reads....Pages 113-124
The Complexity and Application of Syntactic Pattern Recognition Using Finite Inductive Strings....Pages 125-136
An Algorithm to Find All Identical Motifs in Multiple Biological Sequences....Pages 137-148
Discovery of Non-induced Patterns from Sequences....Pages 149-160
Exploring Homology Using the Concept of Three-State Entropy Vector....Pages 161-170
A Maximum-Likelihood Formulation and EM Algorithm for the Protein Multiple Alignment Problem....Pages 171-182
Polynomial Supertree Methods Revisited....Pages 183-194
Enhancing Graph Database Indexing by Suffix Tree Structure....Pages 195-203
Front Matter....Pages 205-205
Semi-Supervised Graph Embedding Scheme with Active Learning (SSGEAL): Classifying High Dimensional Biomedical Data....Pages 207-218
Iterated Local Search for Biclustering of Microarray Data....Pages 219-229
Biologically-aware Latent Dirichlet Allocation (BaLDA) for the Classification of Expression Microarray....Pages 230-241
Front Matter....Pages 205-205
Measuring the Quality of Shifting and Scaling Patterns in Biclusters....Pages 242-252
Frequent Episode Mining to Support Pattern Analysis in Developmental Biology....Pages 253-263
Time Series Gene Expression Data Classification via L 1 -norm Temporal SVM....Pages 264-274
Front Matter....Pages 275-275
Sub-grid and Spot Detection in DNA Microarray Images Using Optimal Multi-level Thresholding....Pages 277-288
Quantification of Cytoskeletal Protein Localization from High-Content Images....Pages 289-300
Pattern Recognition for High Throughput Zebrafish Imaging Using Genetic Algorithm Optimization....Pages 301-312
Consensus of Ambiguity: Theory and Application of Active Learning for Biomedical Image Analysis....Pages 313-324
Semi-supervised Learning of Sparse Linear Models in Mass Spectral Imaging....Pages 325-334
Front Matter....Pages 335-335
A Matrix Algorithm for RNA Secondary Structure Prediction....Pages 337-348
Exploiting Long-Range Dependencies in Protein β -Sheet Secondary Structure Prediction....Pages 349-357
Alpha Helix Prediction Based on Evolutionary Computation....Pages 358-367
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps....Pages 368-379
Front Matter....Pages 381-381
Biological Protein-Protein Interaction Prediction Using Binding Free Energies and Linear Dimensionality Reduction....Pages 383-394
Employing Publically Available Biological Expert Knowledge from Protein-Protein Interaction Information....Pages 395-406
SFFS-MR: A Floating Search Strategy for GRNs Inference....Pages 407-418
Revisiting the Voronoi Description of Protein-Protein Interfaces: Algorithms....Pages 419-430
MC 4 : A Tempering Algorithm for Large-Sample Network Inference....Pages 431-442
Flow-Based Bayesian Estimation of Nonlinear Differential Equations for Modeling Biological Networks....Pages 443-454
Back Matter....Pages -